https://tessamacnish.r-universe.devRecent package updates in tessamacnishR-universehttps://github.com/tessamacnish.pnghttps://tessamacnish.r-universe.devFri, 09 Oct 2026 05:08:30 GMTtessa.macnish@research.uwa.edu.au (Tessa MacNish)A local haplotyping tool for use in trait association and trait prediction analyses pipelines. HaploVar enables users take single nucleotide polymorphisms (SNPs) (in VCF format) and a linkage disequilibrium (LD) matrix, calculate local haplotypes and format the output to be compatible with a wide range of trait association and trait prediction tools. The local haplotypes are calculated from the LD matrix using a clustering algorithm called density-based spatial clustering of applications with noise (DBSCAN) (Ester et al., 1996) <ISBN: 1577350049>.https://github.com/r-universe/tessamacnish/actions/runs/37913630144Fri, 09 Oct 2026 05:08:30 GMTHaploVar0.1.2successhttps://tessamacnish.r-universe.devhttps://github.com/tessamacnish/haplovarintroduction.Rmdintroduction.htmlintroduction2025-01-22 03:37:332025-07-30 03:13:22